Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylcyclotransferase | E5284_RS20495 | Not Available | Negative | 4286622 - 4286966 | 12951.2 |
| autotransporter assembly complex protein tamb | E5284_RS20500 | Not Available | Negative | 4286969 - 4290745 | 136204.0 |
| autotransporter assembly complex protein tama | E5284_RS20505 | Not Available | Negative | 4290742 - 4292475 | 64597.4 |
| peptide-methionine (s)-s-oxide reductase msra | E5284_RS20510 | Not Available | Positive | 4292688 - 4293326 | 23401.4 |
| laci family dna-binding transcriptional regulator | E5284_RS20515 | Not Available | Negative | 4293374 - 4294426 | 38509.6 |
| gfo/idh/moca family protein | E5284_RS20520 | Not Available | Positive | 4294616 - 4295776 | 43031.3 |
| gfo/idh/moca family protein | E5284_RS20525 | Not Available | Positive | 4295787 - 4296968 | 43207.2 |
| gfo/idh/moca family protein | E5284_RS20530 | Not Available | Positive | 4296968 - 4298035 | 39363.8 |
| gfo/idh/moca family protein | E5284_RS20535 | Not Available | Positive | 4298046 - 4299068 | 37514.0 |
| mfs transporter | E5284_RS20540 | Not Available | Positive | 4299275 - 4300819 | 57801.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

