Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | E5284_RS20445 | Not Available | Negative | 4274479 - 4275858 | 50051.3 |
| class 1 fructose-bisphosphatase | E5284_RS20450 | Not Available | Positive | 4276034 - 4277032 | 36621.8 |
| duf2569 domain-containing protein | E5284_RS20455 | Not Available | Negative | 4277071 - 4277583 | 18889.6 |
| galactofuranose abc transporter, permease protein yjff | E5284_RS20460 | Not Available | Negative | 4277662 - 4278663 | 35105.0 |
| galactofuranose abc transporter, atp-binding protein ytft | E5284_RS20465 | Not Available | Negative | 4278650 - 4279672 | 35419.9 |
| galactofuranose abc transporter, atp-binding protein ytfr | E5284_RS20470 | Not Available | Negative | 4279686 - 4281188 | 55067.3 |
| galactofuranose abc transporter substrate-binding protein ytfq | E5284_RS20475 | Not Available | Negative | 4281294 - 4282250 | 34303.6 |
| inorganic diphosphatase | E5284_RS20480 | Not Available | Positive | 4282560 - 4283087 | 19538.3 |
| ynce family protein | E5284_RS20485 | Not Available | Positive | 4283294 - 4284364 | 39819.6 |
| tonb-dependent receptor domain-containing protein | E5284_RS20490 | Not Available | Positive | 4284449 - 4286458 | 74517.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

