Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4312 family protein | E5284_RS20395 | Not Available | Negative | 4267915 - 4268214 | 11299.7 |
| sfcgs family glycine-rich protein | E5284_RS20400 | Not Available | Negative | 4268217 - 4268579 | 12529.2 |
| glycine dehydrogenase | E5284_RS20405 | Not Available | Negative | 4268590 - 4268910 | 11756.0 |
| hypothetical protein | E5284_RS20410 | Not Available | Positive | 4269206 - 4270009 | 30329.4 |
| hypothetical protein | E5284_RS20415 | Not Available | Positive | 4270015 - 4270695 | 26377.8 |
| cytochrome b562 | E5284_RS20420 | Not Available | Negative | 4270786 - 4271172 | 13974.7 |
| metalloprotease pmba | E5284_RS20425 | Not Available | Negative | 4271253 - 4272605 | 48393.3 |
| ribosome biogenesis factor yjga | E5284_RS20430 | Not Available | Positive | 4272701 - 4273252 | 21449.8 |
| duf2628 domain-containing protein | E5284_RS20435 | Not Available | Positive | 4273451 - 4273894 | 16596.2 |
| hypothetical protein | E5284_RS20440 | Not Available | Negative | 4273929 - 4274240 | 11078.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

