Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic ribonucleoside-triphosphate reductase | E5284_RS20345 | Not Available | Positive | 4258118 - 4260256 | 80141.1 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | E5284_RS20350 | Not Available | Positive | 4260378 - 4260842 | 17485.0 |
| hypothetical protein | E5284_RS20355 | Not Available | Negative | 4260846 - 4261129 | 10531.9 |
| type ii toxin-antitoxin system relb/dinj family antitoxin | E5284_RS20360 | Not Available | Negative | 4261119 - 4261361 | 8979.9 |
| bglg family transcription antiterminator | E5284_RS20365 | Not Available | Negative | 4261439 - 4263352 | 73031.2 |
| 2-dehydro-3-deoxy-phosphogluconate aldolase | E5284_RS20370 | Not Available | Negative | 4263374 - 4264114 | 26008.1 |
| dgae family pyridoxal phosphate-dependent ammonia lyase | E5284_RS20375 | Not Available | Negative | 4264111 - 4265229 | 39883.1 |
| amidohydrolase/deacetylase family metallohydrolase | E5284_RS20380 | Not Available | Negative | 4265213 - 4266346 | 40468.4 |
| duf4310 family protein | E5284_RS20385 | Not Available | Negative | 4266460 - 4267104 | 21918.3 |
| duf4311 domain-containing protein | E5284_RS20390 | Not Available | Negative | 4267116 - 4267892 | 27239.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

