Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase regulatory subunit | E5284_RS20295 | Not Available | Positive | 4245618 - 4246079 | 17159.6 |
| 2-iminobutanoate/2-iminopropanoate deaminase | E5284_RS20300 | Not Available | Positive | 4246156 - 4246542 | 13562.2 |
| transposase | E5284_RS20305 | Not Available | Positive | 4246615 - 4247067 | 17335.3 |
| trap transporter large permease | E5284_RS20310 | Not Available | Negative | 4247133 - 4248419 | 45924.6 |
| trap transporter small permease | E5284_RS20315 | Not Available | Negative | 4248450 - 4248959 | 18704.4 |
| trap transporter substrate-binding protein | E5284_RS20320 | Not Available | Negative | 4249022 - 4249999 | 36302.1 |
| magnesium-translocating p-type atpase | E5284_RS20325 | Not Available | Negative | 4250378 - 4253086 | 100075.0 |
| trehalose operon repressor trer | E5284_RS20330 | Not Available | Positive | 4253474 - 4254421 | 34831.0 |
| pts trehalose transporter subunit iibc | E5284_RS20335 | Not Available | Positive | 4254579 - 4255997 | 51114.9 |
| alpha,alpha-phosphotrehalase | E5284_RS20340 | Not Available | Positive | 4256047 - 4257699 | 63632.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

