Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit chi | E5284_RS20245 | Not Available | Positive | 4236306 - 4236749 | 16590.5 |
| valine--trna ligase | E5284_RS20250 | Not Available | Positive | 4236749 - 4239604 | 108128.0 |
| gnat family n-acetyltransferase | E5284_RS20255 | Not Available | Positive | 4239811 - 4240314 | 18198.9 |
| topoisomerase ii | E5284_RS20260 | Not Available | Negative | 4240340 - 4241170 | 30498.6 |
| trna isopentenyl-2-thiomethyl-a-37 hydroxylase miae | E5284_RS20265 | Not Available | Negative | 4241319 - 4242077 | 29090.1 |
| ribonuclease e inhibitor rrab | E5284_RS20270 | Not Available | Negative | 4242129 - 4242554 | 15972.8 |
| ornithine carbamoyltransferase | E5284_RS20275 | Not Available | Positive | 4242719 - 4243723 | 36704.0 |
| yhch/yjgk/yial family protein | E5284_RS20280 | Not Available | Negative | 4243841 - 4244293 | 16950.4 |
| pyr operon leader peptide | E5284_RS20285 | Not Available | Positive | 4244533 - 4244667 | 5059.52 |
| aspartate carbamoyltransferase | E5284_RS20290 | Not Available | Positive | 4244670 - 4245605 | 34434.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

