Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconokinase | E5284_RS20195 | Not Available | Negative | 4225500 - 4226021 | 19508.2 |
| l-idonate 5-dehydrogenase | E5284_RS20200 | Not Available | Positive | 4226239 - 4227282 | 37635.4 |
| gluconate 5-dehydrogenase | E5284_RS20205 | Not Available | Positive | 4227294 - 4228058 | 27537.2 |
| gnt-ii system l-idonate transporter | E5284_RS20210 | Not Available | Positive | 4228141 - 4229460 | 45935.1 |
| laci family dna-binding transcriptional regulator | E5284_RS20215 | Not Available | Positive | 4229512 - 4230510 | 37548.3 |
| helicase hera-like c-terminal domain-containing protein | E5284_RS20220 | Not Available | Positive | 4230590 - 4232092 | 54209.2 |
| lps export abc transporter permease lptg | E5284_RS20230 | Not Available | Negative | 4232216 - 4233298 | 39647.0 |
| lps export abc transporter permease lptf | E5284_RS20235 | Not Available | Negative | 4233298 - 4234398 | 40402.2 |
| hypothetical protein | E5284_RS23340 | Not Available | Negative | 4234461 - 4234511 | 1781.23 |
| leucyl aminopeptidase | E5284_RS20240 | Not Available | Positive | 4234665 - 4236176 | 54879.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

