Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| brex-1 system adenine-specific dna-methyltransferase pglx | E5284_RS20145 | Not Available | Positive | 4210361 - 4213972 | 138153.0 |
| brex-1 system phosphatase pglz type a | E5284_RS20150 | Not Available | Positive | 4214162 - 4216759 | 100099.0 |
| protease lon-related brex system protein brxl | E5284_RS20155 | Not Available | Positive | 4216770 - 4218854 | 77378.3 |
| phospholipase d-like domain-containing protein | E5284_RS20160 | Not Available | Positive | 4218976 - 4220325 | 52190.0 |
| restriction endonuclease | E5284_RS20165 | Not Available | Negative | 4220386 - 4221375 | 37342.2 |
| hypothetical protein | E5284_RS20170 | Not Available | Negative | 4221490 - 4222206 | 27512.7 |
| Trna-leu | Not Available | Not Available | Positive | 4222406 - 4222490 | Not Available |
| hnh endonuclease | E5284_RS20180 | Not Available | Positive | 4222780 - 4223793 | 39069.3 |
| class i sam-dependent methyltransferase | E5284_RS20185 | Not Available | Positive | 4223793 - 4224374 | 21788.9 |
| nad(p)-dependent alcohol dehydrogenase | E5284_RS20190 | Not Available | Positive | 4224449 - 4225468 | 36421.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

