Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide abc transporter permease dppb | E5284_RS00855 | Not Available | Positive | 179051 - 180070 | 37522.5 |
| dipeptide abc transporter permease dppc | E5284_RS00860 | Not Available | Positive | 180080 - 180982 | 32323.4 |
| dipeptide abc transporter atp-binding protein | E5284_RS00865 | Not Available | Positive | 180993 - 181976 | 35750.6 |
| dipeptide abc transporter atp-binding subunit dppf | E5284_RS00870 | Not Available | Positive | 181973 - 182977 | 37515.5 |
| sigma-54 interaction domain-containing protein | E5284_RS00875 | Not Available | Positive | 183154 - 184356 | 45331.2 |
| amino acid permease | E5284_RS00880 | Not Available | Negative | 184401 - 185699 | 48030.2 |
| methionine gamma-lyase | E5284_RS00885 | Not Available | Negative | 185819 - 187015 | 42809.5 |
| biofilm formation regulator hmsp | E5284_RS00890 | Not Available | Positive | 187440 - 189425 | 74611.7 |
| dicarboxylate/amino acid:cation symporter | E5284_RS00895 | Not Available | Positive | 189604 - 190890 | 45487.2 |
| m16 family metallopeptidase | E5284_RS00900 | Not Available | Positive | 191112 - 192605 | 55563.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

