Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Atp-dependent clp protease atp-binding subunit | E5284_RS08220 | Not Available | Positive | 1758627 - 1760903 | 84271.8 |
| Attl | Not Available | Not Available | Positive | 1760966 - 1761000 | Not Available |
| Integrase | E5284_RS08225 | Not Available | Negative | 1761085 - 1762092 | 37855.7 |
| Xre family transcriptional regulator | E5284_RS08230 | Not Available | Negative | 1762189 - 1762488 | 11104.2 |
| Regulatory protein | E5284_RS08235 | Not Available | Positive | 1762608 - 1762883 | 10188.4 |
| Hypothetical protein | E5284_RS23275 | Not Available | Positive | 1762883 - 1763062 | 6798.46 |
| Replication gene b protein | E5284_RS08245 | Not Available | Positive | 1763065 - 1763565 | 19971.1 |
| Gp80 | E5284_RS08250 | Not Available | Positive | 1763632 - 1763841 | 7651.98 |
| Hypothetical protein | E5284_RS08255 | Not Available | Positive | 1763872 - 1764147 | 10173.1 |
| Putative replication protein | E5284_RS08260 | Not Available | Positive | 1764137 - 1766131 | 74983.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

