Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | E5284_RS20045 | Not Available | Negative | 4185001 - 4186698 | 63512.5 |
| l-lactate permease | E5284_RS20050 | Not Available | Positive | 4187131 - 4188684 | 55031.5 |
| aromatic amino acid transporter | E5284_RS20055 | Not Available | Negative | 4189157 - 4190422 | 45249.5 |
| tyrosine phenol-lyase | E5284_RS20060 | Not Available | Negative | 4190612 - 4191982 | 51415.8 |
| endoribonuclease syme | E5284_RS20065 | Not Available | Positive | 4192763 - 4193125 | 13314.3 |
| duf1493 family protein | E5284_RS20070 | Not Available | Negative | 4193255 - 4193581 | 12858.2 |
| ldh family oxidoreductase | E5284_RS20075 | Not Available | Negative | 4193708 - 4194718 | 35383.6 |
| apc family permease | E5284_RS20080 | Not Available | Negative | 4194730 - 4196331 | 57730.5 |
| aldehyde dehydrogenase (nadp(+)) | E5284_RS20085 | Not Available | Negative | 4196343 - 4197950 | 56465.6 |
| dihydrodipicolinate synthase family protein | E5284_RS20090 | Not Available | Negative | 4197965 - 4198885 | 33313.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

