Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate/proton symporter btst | E5284_RS19940 | Not Available | Positive | 4164373 - 4166523 | 77130.2 |
| ybdd/yjix family protein | E5284_RS19945 | Not Available | Positive | 4166631 - 4166825 | 7361.72 |
| gtpase | E5284_RS19950 | Not Available | Positive | 4166838 - 4167794 | 35581.6 |
| brna antitoxin family protein | E5284_RS19960 | Not Available | Negative | 4167905 - 4168207 | 11445.6 |
| duf1127 domain-containing protein | E5284_RS19965 | Not Available | Negative | 4168438 - 4168602 | 6657.11 |
| plp-dependent aminotransferase family protein | E5284_RS19970 | Not Available | Positive | 4168779 - 4170191 | 52605.2 |
| hypothetical protein | E5284_RS19975 | Not Available | Negative | 4170218 - 4171153 | 35530.7 |
| multidrug efflux mfs transporter mdtm | E5284_RS19980 | Not Available | Positive | 4171443 - 4172684 | 44880.2 |
| cystathionine beta-lyase | E5284_RS19985 | Not Available | Negative | 4172766 - 4173956 | 43461.9 |
| dicarboxylate/amino acid:cation symporter | E5284_RS19990 | Not Available | Negative | 4173989 - 4175221 | 43047.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

