Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(1207)-n(2))-methyltransferase rsmc | E5284_RS19840 | Not Available | Positive | 4146222 - 4147253 | 37781.0 |
| Trna-leu | Not Available | Not Available | Positive | 4147391 - 4147477 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 4147507 - 4147592 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 4147627 - 4147712 | Not Available |
| duf1435 domain-containing protein | E5284_RS19860 | Not Available | Negative | 4147752 - 4148027 | 9944.95 |
| ggdef domain-containing protein | E5284_RS19865 | Not Available | Positive | 4148244 - 4149308 | 39848.9 |
| siderophore-iron reductase fhuf | E5284_RS19870 | Not Available | Positive | 4149428 - 4150225 | 30382.8 |
| ybak/ebsc family protein | E5284_RS19875 | Not Available | Positive | 4150381 - 4150839 | 16220.5 |
| dna-binding transcriptional activator bglj | E5284_RS19880 | Not Available | Negative | 4150894 - 4151571 | 25032.4 |
| helix-turn-helix transcriptional regulator | E5284_RS19885 | Not Available | Negative | 4151532 - 4152257 | 27208.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

