Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjji family glycine radical enzyme | E5284_RS19790 | Not Available | Positive | 4137239 - 4138789 | 57926.1 |
| yjjw family glycine radical enzyme activase | E5284_RS19795 | Not Available | Positive | 4138761 - 4139624 | 31769.5 |
| metal-dependent hydrolase | E5284_RS19800 | Not Available | Negative | 4139682 - 4140458 | 29014.0 |
| patatin family protein | E5284_RS19805 | Not Available | Negative | 4140455 - 4141528 | 39415.7 |
| duf1328 domain-containing protein | E5284_RS19810 | Not Available | Negative | 4141650 - 4141811 | 5506.17 |
| molecular chaperone osmy | E5284_RS19815 | Not Available | Negative | 4141938 - 4142555 | 21399.3 |
| peptide chain release factor 3 | E5284_RS19820 | Not Available | Negative | 4142861 - 4144450 | 59751.9 |
| pyrimidine 5'-nucleotidase | E5284_RS19825 | Not Available | Negative | 4144543 - 4145223 | 25412.2 |
| ribosomal protein s18-alanine n-acetyltransferase | E5284_RS19830 | Not Available | Negative | 4145238 - 4145684 | 16616.7 |
| dna polymerase iii subunit psi | E5284_RS19835 | Not Available | Negative | 4145653 - 4146066 | 15301.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

