Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy-dependent translational throttle protein etta | E5284_RS19740 | Not Available | Positive | 4125285 - 4126952 | 62322.3 |
| multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase nadr | E5284_RS19745 | Not Available | Negative | 4127054 - 4128286 | 47150.1 |
| dna repair protein rada | E5284_RS19750 | Not Available | Negative | 4128429 - 4129811 | 49454.1 |
| phosphoserine phosphatase | E5284_RS19755 | Not Available | Negative | 4129823 - 4130791 | 35159.0 |
| ytjb family periplasmic protein | E5284_RS19760 | Not Available | Positive | 4130907 - 4131548 | 23914.1 |
| lipoate--protein ligase lpla | E5284_RS19765 | Not Available | Positive | 4131571 - 4132587 | 37832.6 |
| purine-nucleoside phosphorylase | E5284_RS19770 | Not Available | Negative | 4132673 - 4133392 | 25980.5 |
| phosphopentomutase | E5284_RS19775 | Not Available | Negative | 4133492 - 4134715 | 44235.3 |
| thymidine phosphorylase | E5284_RS19780 | Not Available | Negative | 4134768 - 4136090 | 46953.6 |
| deoxyribose-phosphate aldolase | E5284_RS19785 | Not Available | Negative | 4136198 - 4136977 | 27659.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

