Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system response regulator arca | E5284_RS19690 | Not Available | Positive | 4115478 - 4116194 | 27292.7 |
| cell envelope integrity protein cred | E5284_RS19695 | Not Available | Negative | 4116255 - 4117601 | 49707.7 |
| two-component system sensor histidine kinase crec | E5284_RS19700 | Not Available | Negative | 4117659 - 4119083 | 52014.8 |
| two-component system response regulator creb | E5284_RS19705 | Not Available | Negative | 4119083 - 4119772 | 26013.6 |
| protein crea | E5284_RS19710 | Not Available | Negative | 4119785 - 4120258 | 17137.7 |
| mdr efflux pump acrab transcriptional activator roba | E5284_RS19715 | Not Available | Positive | 4120470 - 4121339 | 33115.8 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase gpmb | E5284_RS19720 | Not Available | Negative | 4121336 - 4121983 | 23828.4 |
| inosine/xanthosine triphosphatase | E5284_RS19725 | Not Available | Positive | 4122036 - 4122551 | 18577.1 |
| trp operon repressor | E5284_RS19730 | Not Available | Negative | 4122601 - 4122927 | 12510.0 |
| murein transglycosylase | E5284_RS19735 | Not Available | Negative | 4123016 - 4124953 | 73204.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

