Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin guanine dinucleotide-containing s/n-oxide reductase | E5284_RS00810 | Not Available | Positive | 168667 - 171000 | 85671.1 |
| n-acetyltransferase | E5284_RS00815 | Not Available | Negative | 170969 - 171409 | 16966.1 |
| dna-3-methyladenine glycosylase i | E5284_RS00820 | Not Available | Negative | 171387 - 171968 | 21560.7 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS00825 | Not Available | Positive | 172128 - 172832 | 25816.8 |
| mfs transporter | E5284_RS00830 | Not Available | Positive | 173084 - 174286 | 42700.9 |
| kdo(2)-lipid a phosphoethanolamine 7''-transferase | E5284_RS00835 | Not Available | Positive | 174495 - 176186 | 64265.6 |
| Trna-pro | Not Available | Not Available | Positive | 176278 - 176354 | Not Available |
| Ncrna_class:other | Not Available | Not Available | Positive | 176386 - 176520 | Not Available |
| hypothetical protein | E5284_RS23090 | Not Available | Positive | 177099 - 177335 | 8862.43 |
| dipeptide abc transporter periplasmic-binding protein dppa | E5284_RS00850 | Not Available | Positive | 177250 - 178857 | 60223.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

