Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | E5284_RS19540 | Not Available | Negative | 4081349 - 4084573 | 118185.0 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | E5284_RS19545 | Not Available | Negative | 4084592 - 4085740 | 41382.2 |
| 4-hydroxy-tetrahydrodipicolinate reductase | E5284_RS19550 | Not Available | Negative | 4086197 - 4087018 | 28806.5 |
| alanyl-trna editing protein | E5284_RS19555 | Not Available | Negative | 4087288 - 4087920 | 22546.9 |
| lysr family transcriptional regulator | E5284_RS19560 | Not Available | Positive | 4088013 - 4088921 | 33473.3 |
| ribonucleoside hydrolase rihc | E5284_RS19565 | Not Available | Negative | 4088922 - 4089836 | 32794.8 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | E5284_RS19570 | Not Available | Negative | 4089902 - 4090852 | 34362.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | E5284_RS19575 | Not Available | Negative | 4090854 - 4091303 | 16072.9 |
| signal peptidase ii | E5284_RS19580 | Not Available | Negative | 4091421 - 4091918 | 18275.6 |
| isoleucine--trna ligase | E5284_RS19585 | Not Available | Negative | 4091918 - 4094734 | 104124.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

