Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | E5284_RS19490 | Not Available | Negative | 4069940 - 4071226 | 45748.8 |
| electron transfer flavoprotein subunit alpha/fixb family protein | E5284_RS19495 | Not Available | Negative | 4071277 - 4072218 | 33370.1 |
| electron transfer flavoprotein fixa | E5284_RS19500 | Not Available | Negative | 4072234 - 4073004 | 27275.6 |
| l-carnitine/gamma-butyrobetaine antiporter | E5284_RS19505 | Not Available | Positive | 4073486 - 4075003 | 56609.5 |
| crotonobetainyl-coa dehydrogenase | E5284_RS19510 | Not Available | Positive | 4075037 - 4076179 | 42500.7 |
| l-carnitine coa-transferase | E5284_RS19515 | Not Available | Positive | 4076240 - 4077457 | 44967.0 |
| crotonobetaine/carnitine-coa ligase | E5284_RS19520 | Not Available | Positive | 4077521 - 4079074 | 58265.8 |
| crotonobetainyl-coa hydratase | E5284_RS19525 | Not Available | Positive | 4079128 - 4079913 | 28156.8 |
| carnitine operon protein caie | E5284_RS19530 | Not Available | Positive | 4080007 - 4080603 | 21422.9 |
| carnitine metabolism transcriptional regulator caif | E5284_RS19535 | Not Available | Negative | 4080680 - 4081075 | 15302.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

