Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | E5284_RS19440 | Not Available | Positive | 4061570 - 4062562 | 35208.1 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | E5284_RS19445 | Not Available | Positive | 4062555 - 4063376 | 30463.0 |
| co2+/mg2+ efflux protein apag | E5284_RS19450 | Not Available | Positive | 4063379 - 4063756 | 13947.6 |
| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) apah | E5284_RS19455 | Not Available | Positive | 4063767 - 4064615 | 31355.3 |
| type 3 dihydrofolate reductase | E5284_RS19460 | Not Available | Negative | 4064712 - 4065191 | 18029.3 |
| glutathione-regulated potassium-efflux system protein kefc | E5284_RS19465 | Not Available | Negative | 4065390 - 4067252 | 67268.5 |
| glutathione-regulated potassium-efflux system oxidoreductase keff | E5284_RS19470 | Not Available | Negative | 4067245 - 4067775 | 20155.2 |
| ygdi/ygdr family lipoprotein | E5284_RS19475 | Not Available | Negative | 4067880 - 4068113 | 8333.73 |
| mfs transporter | E5284_RS19480 | Not Available | Negative | 4068204 - 4069547 | 48917.3 |
| ferredoxin-like protein fixx | E5284_RS19485 | Not Available | Negative | 4069656 - 4069943 | 10626.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

