Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribulokinase | E5284_RS19390 | Not Available | Positive | 4045604 - 4047313 | 61770.4 |
| l-arabinose isomerase | E5284_RS19395 | Not Available | Positive | 4047324 - 4048826 | 56012.0 |
| l-ribulose-5-phosphate 4-epimerase | E5284_RS19400 | Not Available | Positive | 4048923 - 4049618 | 25436.3 |
| duf4751 family protein | E5284_RS19405 | Not Available | Negative | 4049663 - 4050049 | 14795.1 |
| dna polymerase ii | E5284_RS19410 | Not Available | Positive | 4050577 - 4052928 | 89915.3 |
| rna polymerase-associated protein rapa | E5284_RS19415 | Not Available | Positive | 4053104 - 4056010 | 109771.0 |
| bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rlua | E5284_RS19420 | Not Available | Positive | 4056022 - 4056681 | 24884.2 |
| co-chaperone djla | E5284_RS19425 | Not Available | Negative | 4056786 - 4057598 | 30617.3 |
| lps assembly protein lptd | E5284_RS19430 | Not Available | Positive | 4057854 - 4060229 | 90094.3 |
| peptidylprolyl isomerase sura | E5284_RS19435 | Not Available | Positive | 4060284 - 4061570 | 47053.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

