Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase large subunit | E5284_RS19340 | Not Available | Positive | 4034409 - 4035809 | 49791.5 |
| 3-isopropylmalate dehydratase small subunit | E5284_RS19345 | Not Available | Positive | 4035820 - 4036425 | 22635.7 |
| sugar efflux transporter | E5284_RS19350 | Not Available | Negative | 4036533 - 4037711 | 42534.7 |
| glucose uptake inhibitor sgrt | E5284_RS19355 | Not Available | Negative | 4037827 - 4037949 | 4913.04 |
| hth-type transcriptional regulator sgrr | E5284_RS19360 | Not Available | Positive | 4038049 - 4039704 | 64033.6 |
| thiamine abc transporter substrate binding subunit | E5284_RS19365 | Not Available | Positive | 4040220 - 4041203 | 36354.6 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | E5284_RS19370 | Not Available | Positive | 4041179 - 4042789 | 59496.7 |
| thiamine abc transporter atp-binding protein thiq | E5284_RS19375 | Not Available | Positive | 4042773 - 4043474 | 25378.2 |
| deda family protein | E5284_RS19380 | Not Available | Negative | 4043532 - 4044299 | 28283.0 |
| arabinose operon transcriptional regulator arac | E5284_RS19385 | Not Available | Negative | 4044419 - 4045264 | 32178.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

