Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsl | E5284_RS19290 | Not Available | Negative | 4023865 - 4024230 | 13568.6 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | E5284_RS19295 | Not Available | Negative | 4024227 - 4025168 | 34694.7 |
| division/cell wall cluster transcriptional repressor mraz | E5284_RS19300 | Not Available | Negative | 4025170 - 4025628 | 17378.1 |
| catabolite repressor/activator | E5284_RS19305 | Not Available | Negative | 4026243 - 4027247 | 37933.4 |
| acetolactate synthase small subunit | E5284_RS19310 | Not Available | Negative | 4027427 - 4027918 | 18033.0 |
| acetolactate synthase 3 large subunit | E5284_RS19315 | Not Available | Negative | 4027921 - 4029645 | 62978.0 |
| transcriptional regulator leuo | E5284_RS19320 | Not Available | Negative | 4029965 - 4030912 | 35800.0 |
| leu operon leader peptide | E5284_RS19325 | Not Available | Positive | 4031567 - 4031647 | 2949.71 |
| 2-isopropylmalate synthase | E5284_RS19330 | Not Available | Positive | 4031744 - 4033315 | 57411.3 |
| 3-isopropylmalate dehydrogenase | E5284_RS19335 | Not Available | Positive | 4033315 - 4034406 | 39375.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

