Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsq | E5284_RS19240 | Not Available | Negative | 4011273 - 4012109 | 31407.4 |
| d-alanine--d-alanine ligase | E5284_RS19245 | Not Available | Negative | 4012111 - 4013031 | 32719.4 |
| udp-n-acetylmuramate--l-alanine ligase | E5284_RS19250 | Not Available | Negative | 4013024 - 4014499 | 53324.6 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | E5284_RS19255 | Not Available | Negative | 4014551 - 4015618 | 37892.8 |
| cell division protein ftsw | E5284_RS19260 | Not Available | Negative | 4015615 - 4016859 | 45957.9 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | E5284_RS19265 | Not Available | Negative | 4016859 - 4018175 | 46928.5 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | E5284_RS19270 | Not Available | Negative | 4018178 - 4019260 | 39983.4 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | E5284_RS19275 | Not Available | Negative | 4019254 - 4020612 | 47377.6 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | E5284_RS19280 | Not Available | Negative | 4020609 - 4022096 | 53271.7 |
| peptidoglycan glycosyltransferase ftsi | E5284_RS19285 | Not Available | Negative | 4022083 - 4023849 | 63983.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

