Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmp reductase | E5284_RS19190 | Not Available | Negative | 4000721 - 4001764 | 37231.8 |
| dephospho-coa kinase | E5284_RS19195 | Not Available | Positive | 4001990 - 4002610 | 22820.2 |
| cell division protein zapd | E5284_RS19200 | Not Available | Positive | 4002610 - 4003353 | 28343.2 |
| dna gyrase inhibitor yacg | E5284_RS19205 | Not Available | Positive | 4003363 - 4003557 | 7220.41 |
| 8-oxo-dgtp diphosphatase mutt | E5284_RS19210 | Not Available | Negative | 4003659 - 4004048 | 14546.3 |
| preprotein translocase subunit seca | E5284_RS19215 | Not Available | Negative | 4004105 - 4006810 | 101924.0 |
| seca translation cis-regulator secm | E5284_RS19220 | Not Available | Negative | 4006871 - 4007377 | 18566.3 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | E5284_RS19225 | Not Available | Negative | 4007659 - 4008576 | 33972.9 |
| cell division protein ftsz | E5284_RS19230 | Not Available | Negative | 4008677 - 4009828 | 40386.4 |
| cell division protein ftsa | E5284_RS19235 | Not Available | Negative | 4010014 - 4011276 | 45289.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

