Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper-binding periplasmic metallochaperone cuep | E5284_RS00760 | Not Available | Negative | 159931 - 160470 | 19662.4 |
| rna chaperone/antiterminator cspa | E5284_RS00765 | Not Available | Negative | 160658 - 160870 | 7417.69 |
| hth-type transcriptional regulator | E5284_RS00770 | Not Available | Negative | 161154 - 161444 | 11089.5 |
| duf3053 domain-containing protein | E5284_RS00775 | Not Available | Positive | 161823 - 162533 | 25639.4 |
| glyoxylate/hydroxypyruvate reductase ghrb | E5284_RS00780 | Not Available | Negative | 162592 - 163566 | 35207.3 |
| mfs transporter | E5284_RS00785 | Not Available | Negative | 163589 - 164869 | 46945.0 |
| sugar kinase | E5284_RS00790 | Not Available | Negative | 164934 - 165872 | 33357.8 |
| sugar phosphate isomerase/epimerase family protein | E5284_RS00795 | Not Available | Negative | 165876 - 166625 | 27544.9 |
| laci family dna-binding transcriptional regulator | E5284_RS00800 | Not Available | Negative | 166726 - 167742 | 37195.8 |
| ompa family lipoprotein | E5284_RS00805 | Not Available | Negative | 167844 - 168506 | 22422.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

