Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | E5284_RS19085 | Not Available | Negative | 3972489 - 3973502 | 37104.7 |
| sugar porter family mfs transporter | E5284_RS19090 | Not Available | Positive | 3973735 - 3975138 | 51127.2 |
| glycoside hydrolase family 36 protein | E5284_RS19095 | Not Available | Positive | 3975157 - 3977208 | 77608.8 |
| protein yacl | E5284_RS19100 | Not Available | Negative | 3977241 - 3977603 | 13974.3 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | E5284_RS19105 | Not Available | Negative | 3977778 - 3980375 | 93568.6 |
| duf3300 domain-containing protein | E5284_RS19110 | Not Available | Positive | 3980809 - 3982413 | 58651.0 |
| duf2950 family protein | E5284_RS19115 | Not Available | Positive | 3982424 - 3983218 | 28958.0 |
| dihydrolipoyl dehydrogenase | E5284_RS19120 | Not Available | Negative | 3983339 - 3984763 | 50556.3 |
| pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | E5284_RS19125 | Not Available | Negative | 3984939 - 3986822 | 65358.6 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | E5284_RS19130 | Not Available | Negative | 3986837 - 3989500 | 99702.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

