Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbrial protein | E5284_RS19035 | Not Available | Positive | 3963498 - 3964583 | 38966.6 |
| polysaccharide deacetylase family protein | E5284_RS19040 | Not Available | Negative | 3964586 - 3965815 | 46356.8 |
| pts sugar transporter subunit iia | E5284_RS19045 | Not Available | Negative | 3965877 - 3966317 | 16386.7 |
| abc transporter permease | E5284_RS19050 | Not Available | Negative | 3966421 - 3967191 | 28636.1 |
| abc transporter atp-binding protein | E5284_RS19055 | Not Available | Negative | 3967188 - 3968114 | 34654.1 |
| carbonate dehydratase | E5284_RS19060 | Not Available | Positive | 3968216 - 3968878 | 25066.0 |
| hypoxanthine phosphoribosyltransferase | E5284_RS19065 | Not Available | Negative | 3968951 - 3969487 | 20110.4 |
| hypothetical protein | E5284_RS19070 | Not Available | Negative | 3969735 - 3970259 | 19415.8 |
| multicopper oxidase cueo | E5284_RS19075 | Not Available | Negative | 3970385 - 3971995 | 58607.9 |
| yacc family pilotin-like protein | E5284_RS19080 | Not Available | Positive | 3972149 - 3972496 | 12884.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

