Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | E5284_RS18985 | Not Available | Positive | 3954656 - 3955147 | 18546.2 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | E5284_RS18990 | Not Available | Positive | 3955268 - 3956059 | 28115.1 |
| pantoate--beta-alanine ligase | E5284_RS18995 | Not Available | Positive | 3956071 - 3956925 | 31781.7 |
| aspartate 1-decarboxylase | E5284_RS19000 | Not Available | Positive | 3957021 - 3957401 | 13859.5 |
| fimbrial protein | E5284_RS19005 | Not Available | Positive | 3957693 - 3958277 | 19905.0 |
| fimbrial chaperone | E5284_RS19010 | Not Available | Positive | 3958337 - 3959059 | 26014.0 |
| outer membrane usher protein | E5284_RS19015 | Not Available | Positive | 3959105 - 3961660 | 93006.3 |
| fimbrial protein | E5284_RS19020 | Not Available | Positive | 3961683 - 3962264 | 19923.6 |
| fimbrial protein | E5284_RS19025 | Not Available | Positive | 3962287 - 3962844 | 18581.8 |
| fimbrial-like protein | E5284_RS19030 | Not Available | Positive | 3962866 - 3963483 | 21766.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

