Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe(3+)-hydroxamate abc transporter substrate-binding protein fhud | E5284_RS18935 | Not Available | Negative | 3940882 - 3941772 | 32829.0 |
| fe3+-hydroxamate abc transporter atp-binding protein fhuc | E5284_RS18940 | Not Available | Negative | 3941772 - 3942569 | 28947.3 |
| ferrichrome porin fhua | E5284_RS18945 | Not Available | Negative | 3942617 - 3944830 | 81725.7 |
| bifunctional glycosyl transferase/transpeptidase | E5284_RS18950 | Not Available | Negative | 3945063 - 3947594 | 94148.8 |
| atp-dependent helicase hrpb | E5284_RS18955 | Not Available | Negative | 3947720 - 3950149 | 89060.7 |
| rna 2',3'-cyclic phosphodiesterase | E5284_RS18960 | Not Available | Positive | 3950223 - 3950756 | 19900.1 |
| dna/rna nuclease sfsa | E5284_RS18965 | Not Available | Positive | 3950769 - 3951473 | 26149.4 |
| rna polymerase-binding protein dksa | E5284_RS18970 | Not Available | Positive | 3951652 - 3952107 | 17544.7 |
| trna glutamyl-q(34) synthetase gluqrs | E5284_RS18975 | Not Available | Positive | 3952180 - 3953076 | 33710.0 |
| polynucleotide adenylyltransferase pcnb | E5284_RS18980 | Not Available | Positive | 3953148 - 3954545 | 53857.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

