Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine endoprotease degp | E5284_RS18890 | Not Available | Negative | 3929958 - 3931391 | 49511.7 |
| dgtpase | E5284_RS18895 | Not Available | Negative | 3931521 - 3933038 | 59213.0 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | E5284_RS18900 | Not Available | Positive | 3933122 - 3933820 | 24259.3 |
| vitamin b12 abc transporter substrate-binding protein btuf | E5284_RS18905 | Not Available | Positive | 3933813 - 3934613 | 29158.2 |
| tric cation channel family protein | E5284_RS18910 | Not Available | Positive | 3934652 - 3935275 | 22035.1 |
| iron-sulfur cluster insertion protein erpa | E5284_RS18915 | Not Available | Negative | 3935395 - 3935739 | 12070.1 |
| hypothetical protein | E5284_RS23240 | Not Available | Negative | 3935732 - 3935797 | 2188.76 |
| h(+)/cl(-) exchange transporter clca | E5284_RS18920 | Not Available | Negative | 3935821 - 3937242 | 50234.8 |
| glutamate-1-semialdehyde 2,1-aminomutase | E5284_RS18925 | Not Available | Positive | 3937411 - 3938691 | 45391.7 |
| fe(3+)-hydroxamate abc transporter permease fhub | E5284_RS18930 | Not Available | Negative | 3938828 - 3940867 | 72471.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

