Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hii | E5284_RS18790 | Not Available | Negative | 3908377 - 3908973 | 21516.2 |
| lipid-a-disaccharide synthase | E5284_RS18795 | Not Available | Negative | 3908970 - 3910118 | 42344.9 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | E5284_RS18800 | Not Available | Negative | 3910118 - 3910906 | 28179.8 |
| 3-hydroxyacyl-acp dehydratase fabz | E5284_RS18805 | Not Available | Negative | 3910910 - 3911365 | 17034.0 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | E5284_RS18810 | Not Available | Negative | 3911468 - 3912493 | 36033.6 |
| molecular chaperone skp | E5284_RS18815 | Not Available | Negative | 3912497 - 3912982 | 17728.2 |
| outer membrane protein assembly factor bama | E5284_RS18820 | Not Available | Negative | 3913105 - 3915519 | 89799.6 |
| sigma e protease regulator rsep | E5284_RS18825 | Not Available | Negative | 3915549 - 3916901 | 49171.2 |
| phosphatidate cytidylyltransferase | E5284_RS18830 | Not Available | Negative | 3916913 - 3917770 | 31450.6 |
| (2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase | E5284_RS18835 | Not Available | Negative | 3917783 - 3918541 | 28384.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

