Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envelope stress response activation lipoprotein nlpe | E5284_RS18735 | Not Available | Negative | 3897424 - 3898122 | 25569.5 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | E5284_RS18740 | Not Available | Negative | 3898154 - 3898576 | 15608.9 |
| yaeq family protein | E5284_RS18745 | Not Available | Negative | 3898576 - 3899118 | 20867.7 |
| yaep family protein | E5284_RS18750 | Not Available | Positive | 3899307 - 3899507 | 7228.55 |
| rho-binding antiterminator | E5284_RS18755 | Not Available | Positive | 3899494 - 3899754 | 9592.3 |
| trna lysidine(34) synthetase tils | E5284_RS18765 | Not Available | Negative | 3899838 - 3901130 | 48191.1 |
| voc family protein | E5284_RS18770 | Not Available | Negative | 3901192 - 3901581 | 14753.6 |
| lysine decarboxylase ldcc | E5284_RS18775 | Not Available | Negative | 3901635 - 3903785 | 80922.1 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | E5284_RS18780 | Not Available | Negative | 3903886 - 3904845 | 35302.7 |
| dna polymerase iii subunit alpha | E5284_RS18785 | Not Available | Negative | 3904858 - 3908340 | 130357.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

