Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | Positive | 3885835 - 3888744 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 3888962 - 3889036 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3889125 - 3890666 | Not Available |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | E5284_RS18700 | Not Available | Negative | 3891034 - 3891600 | 20914.0 |
| methionine abc transporter atp-binding protein metn | E5284_RS18705 | Not Available | Positive | 3891790 - 3892821 | 37783.7 |
| methionine abc transporter permease meti | E5284_RS18710 | Not Available | Positive | 3892814 - 3893467 | 23292.6 |
| methionine abc transporter substrate-binding lipoprotein metq | E5284_RS18715 | Not Available | Positive | 3893513 - 3894328 | 29392.2 |
| rcs stress response system protein rcsf | E5284_RS18720 | Not Available | Positive | 3894445 - 3894849 | 14219.3 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | E5284_RS18725 | Not Available | Positive | 3894846 - 3895553 | 26410.9 |
| proline--trna ligase | E5284_RS18730 | Not Available | Positive | 3895664 - 3897382 | 63627.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

