Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | E5284_RS18635 | Not Available | Negative | 3877528 - 3878250 | 27331.7 |
| hydroxyacylglutathione hydrolase | E5284_RS18640 | Not Available | Positive | 3878284 - 3879039 | 28480.1 |
| murein transglycosylase d | E5284_RS18645 | Not Available | Positive | 3879111 - 3880469 | 49595.5 |
| class i sam-dependent methyltransferase | E5284_RS18650 | Not Available | Negative | 3880519 - 3881289 | 28109.2 |
| endonuclease/exonuclease/phosphatase family protein | E5284_RS18655 | Not Available | Negative | 3881368 - 3882168 | 30040.5 |
| mfs transporter | E5284_RS18660 | Not Available | Negative | 3882300 - 3883475 | 40537.0 |
| dna-binding transcriptional regulator yafc | E5284_RS18665 | Not Available | Positive | 3883581 - 3884495 | 33634.7 |
| 2,5-didehydrogluconate reductase dkgb | E5284_RS18670 | Not Available | Negative | 3884525 - 3885328 | 29105.9 |
| Trna-asp | Not Available | Not Available | Positive | 3885492 - 3885568 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3885624 - 3885739 | Not Available |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

