Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | E5284_RS00710 | Not Available | Negative | 147127 - 149157 | 75507.3 |
| protein bax | E5284_RS00715 | Not Available | Positive | 149474 - 150298 | 30876.2 |
| d-xylose utilization transcriptional activator xylr | E5284_RS00720 | Not Available | Negative | 150384 - 151562 | 44693.2 |
| xylose isomerase | E5284_RS00725 | Not Available | Positive | 151925 - 153247 | 49623.5 |
| xylulokinase | E5284_RS00730 | Not Available | Positive | 153320 - 154774 | 52532.2 |
| inner membrane protein yiab | E5284_RS00735 | Not Available | Positive | 154942 - 155289 | 12936.5 |
| acyltransferase | E5284_RS00740 | Not Available | Negative | 155303 - 156298 | 37136.6 |
| ysab family lipoprotein | E5284_RS00745 | Not Available | Positive | 156473 - 156781 | 11376.6 |
| glycine--trna ligase subunit alpha | E5284_RS00750 | Not Available | Positive | 156877 - 157788 | 34748.3 |
| glycine--trna ligase subunit beta | E5284_RS00755 | Not Available | Positive | 157798 - 159867 | 76651.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

