Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbrial protein | E5284_RS18585 | Not Available | Negative | 3868847 - 3869452 | 22014.7 |
| molecular chaperone | E5284_RS18590 | Not Available | Negative | 3869466 - 3870242 | 28509.4 |
| fimbria/pilus outer membrane usher protein | E5284_RS18595 | Not Available | Negative | 3870269 - 3872740 | 91371.5 |
| fimbrial protein | E5284_RS18600 | Not Available | Negative | 3872783 - 3873331 | 20216.0 |
| fimbrial protein | E5284_RS18605 | Not Available | Negative | 3873401 - 3873949 | 18835.0 |
| transcriptional regulator | E5284_RS18610 | Not Available | Positive | 3874599 - 3875387 | 29382.3 |
| hypothetical protein | E5284_RS18615 | Not Available | Positive | 3875389 - 3875907 | 19289.1 |
| Trna-asp | Not Available | Not Available | Positive | 3876063 - 3876139 | Not Available |
| dna polymerase iii subunit epsilon | E5284_RS18625 | Not Available | Negative | 3876273 - 3877001 | 27059.3 |
| hypothetical protein | E5284_RS18630 | Not Available | Positive | 3876955 - 3877531 | 20902.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

