Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan meso-diaminopimelic acid protein amidase | E5284_RS18535 | Not Available | Positive | 3858528 - 3859268 | 27965.6 |
| class ii glutamine amidotransferase | E5284_RS18540 | Not Available | Negative | 3859239 - 3860006 | 28531.1 |
| d-sedoheptulose 7-phosphate isomerase | E5284_RS18545 | Not Available | Negative | 3860118 - 3860696 | 20870.0 |
| acyl-coa dehydrogenase fade | E5284_RS18550 | Not Available | Positive | 3860936 - 3863380 | 89331.9 |
| amidohydrolase | E5284_RS18555 | Not Available | Positive | 3863490 - 3864257 | 29248.8 |
| spy/cpxp family protein refolding chaperone | E5284_RS18560 | Not Available | Positive | 3864413 - 3864823 | 15128.3 |
| eal domain-containing protein | E5284_RS18565 | Not Available | Negative | 3864850 - 3865563 | 27474.6 |
| o-antigen ligase family protein | E5284_RS18570 | Not Available | Negative | 3865565 - 3867232 | 62710.2 |
| fimbrial protein | E5284_RS18575 | Not Available | Negative | 3867234 - 3867776 | 19153.6 |
| fimbrial protein | E5284_RS18580 | Not Available | Negative | 3867786 - 3868850 | 38042.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

