Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | E5284_RS18435 | Not Available | Positive | 3837475 - 3840036 | 96992.0 |
| cdp-glycerol glycerophosphotransferase family protein | E5284_RS18440 | Not Available | Positive | 3840078 - 3841259 | 45626.3 |
| polysialyltransferase family glycosyltransferase | E5284_RS18445 | Not Available | Positive | 3841269 - 3842438 | 45278.2 |
| polysaccharide pyruvyl transferase family protein | E5284_RS18450 | Not Available | Negative | 3842481 - 3843530 | 39473.6 |
| adenylyltransferase/cytidyltransferase family protein | E5284_RS18455 | Not Available | Negative | 3843582 - 3843977 | 14525.7 |
| flagellar export protein flij | E5284_RS18460 | Not Available | Negative | 3843974 - 3844417 | 16796.5 |
| flagellar protein export atpase flii | E5284_RS18465 | Not Available | Negative | 3844420 - 3845763 | 47897.3 |
| flagellar assembly protein flih | E5284_RS18470 | Not Available | Negative | 3845756 - 3846466 | 26575.4 |
| flagellar motor switch protein flig | E5284_RS18475 | Not Available | Negative | 3846470 - 3847486 | 38301.1 |
| flagellar basal-body ms-ring/collar protein flif | E5284_RS18480 | Not Available | Negative | 3847464 - 3849134 | 60510.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

