Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase puuc | E5284_RS18165 | Not Available | Positive | 3790449 - 3791936 | 53599.7 |
| nad(p)/fad-dependent oxidoreductase | E5284_RS18170 | Not Available | Positive | 3791939 - 3793219 | 47331.5 |
| tetratricopeptide repeat protein | E5284_RS18175 | Not Available | Positive | 3793420 - 3793956 | 20057.7 |
| Trna-thr | Not Available | Not Available | Positive | 3805225 - 3805300 | Not Available |
| glutamate-5-semialdehyde dehydrogenase | E5284_RS18255 | Not Available | Negative | 3805415 - 3806668 | 44809.8 |
| glutamate 5-kinase | E5284_RS18260 | Not Available | Negative | 3806680 - 3807783 | 39102.9 |
| phosphoporin phoe | E5284_RS18265 | Not Available | Positive | 3808072 - 3809127 | 38813.0 |
| sigma factor-binding protein crl | E5284_RS18270 | Not Available | Negative | 3809184 - 3809585 | 15594.6 |
| esterase frsa | E5284_RS18275 | Not Available | Negative | 3809643 - 3810887 | 46952.3 |
| xanthine phosphoribosyltransferase | E5284_RS18280 | Not Available | Negative | 3810987 - 3811445 | 16929.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

