Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS18115 | Not Available | Positive | 3778381 - 3779388 | 35987.3 |
| vwa domain-containing protein | E5284_RS18120 | Not Available | Positive | 3779385 - 3781346 | 72215.8 |
| abc transporter atp-binding protein | E5284_RS18125 | Not Available | Positive | 3781346 - 3782071 | 26540.2 |
| abc transporter permease | E5284_RS18130 | Not Available | Positive | 3782100 - 3783275 | 42977.4 |
| sumf1/egtb/pvdo family nonheme iron enzyme | E5284_RS18135 | Not Available | Positive | 3783304 - 3784872 | 58540.4 |
| hypothetical protein | E5284_RS18140 | Not Available | Positive | 3784910 - 3785419 | 18357.8 |
| apc family permease | E5284_RS18145 | Not Available | Negative | 3785553 - 3786941 | 50923.9 |
| glutamine synthetase family protein | E5284_RS18150 | Not Available | Negative | 3787332 - 3788750 | 52918.9 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase | E5284_RS18155 | Not Available | Positive | 3788962 - 3789726 | 27985.6 |
| hth-type transcriptional regulator puur | E5284_RS18160 | Not Available | Positive | 3789752 - 3790309 | 20087.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

