Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS18065 | Not Available | Positive | 3762960 - 3763469 | 19447.3 |
| ferrioxamine b receptor foxa | E5284_RS18070 | Not Available | Negative | 3763597 - 3765705 | 78494.5 |
| helix-turn-helix transcriptional regulator | E5284_RS18075 | Not Available | Negative | 3765827 - 3766810 | 36895.1 |
| dj-1/pfpi family protein | E5284_RS18080 | Not Available | Negative | 3767011 - 3767574 | 20420.4 |
| glycine zipper domain-containing protein | E5284_RS18085 | Not Available | Positive | 3768496 - 3769233 | 25368.1 |
| hypothetical protein | E5284_RS18090 | Not Available | Positive | 3769323 - 3769805 | 18039.2 |
| tellurite resistance domain protein | E5284_RS18095 | Not Available | Positive | 3769934 - 3771064 | 42701.9 |
| srfa family protein | E5284_RS18100 | Not Available | Positive | 3771115 - 3772587 | 52202.7 |
| virulence factor srfb | E5284_RS18105 | Not Available | Positive | 3772605 - 3775673 | 114879.0 |
| virulence factor srfc family protein | E5284_RS18110 | Not Available | Positive | 3775673 - 3778387 | 101045.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

