Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase aldb | E5284_RS00660 | Not Available | Positive | 135458 - 136996 | 56396.5 |
| duf3302 domain-containing protein | E5284_RS00665 | Not Available | Positive | 137257 - 137580 | 12394.3 |
| hlyd family secretion protein | E5284_RS00670 | Not Available | Positive | 137586 - 138722 | 41775.5 |
| lysr family transcriptional regulator | E5284_RS00675 | Not Available | Negative | 138739 - 139692 | 35954.0 |
| mipa/ompv family protein | E5284_RS00680 | Not Available | Positive | 139814 - 140554 | 27083.5 |
| glycoside hydrolase family 127 protein | E5284_RS00685 | Not Available | Negative | 140641 - 142596 | 74491.3 |
| mfs transporter | E5284_RS00690 | Not Available | Negative | 142607 - 144007 | 51359.9 |
| arac family transcriptional regulator | E5284_RS00695 | Not Available | Positive | 144260 - 145075 | 30721.3 |
| 4fe-4s dicluster domain-containing protein | E5284_RS00700 | Not Available | Positive | 145190 - 145663 | 17032.7 |
| valine--pyruvate transaminase | E5284_RS00705 | Not Available | Negative | 145700 - 146992 | 48412.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

