Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | E5284_RS18015 | Not Available | Positive | 3749897 - 3751150 | 46645.0 |
| propionate--coa ligase | E5284_RS18020 | Not Available | Negative | 3751220 - 3753106 | 69434.8 |
| bifunctional 2-methylcitrate dehydratase/aconitate hydratase | E5284_RS18025 | Not Available | Negative | 3753146 - 3754597 | 53706.5 |
| 2-methylcitrate synthase | E5284_RS18030 | Not Available | Negative | 3754637 - 3755806 | 43051.5 |
| methylisocitrate lyase | E5284_RS18035 | Not Available | Negative | 3755925 - 3756809 | 31836.2 |
| propionate catabolism operon regulatory protein prpr | E5284_RS18040 | Not Available | Positive | 3757061 - 3758656 | 58961.3 |
| duf1471 family periplasmic protein yaho | E5284_RS18045 | Not Available | Negative | 3758705 - 3758980 | 9821.84 |
| lyse family transporter | E5284_RS18050 | Not Available | Positive | 3759344 - 3759976 | 23085.6 |
| diguanylate cyclase | E5284_RS18055 | Not Available | Positive | 3760068 - 3761456 | 52776.2 |
| 4fe-4s binding protein | E5284_RS18060 | Not Available | Positive | 3761675 - 3762766 | 41064.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

