Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative bifunctional diguanylate cyclase/phosphodiesterase | E5284_RS17965 | Not Available | Negative | 3738216 - 3740204 | 74883.9 |
| molybdopterin-dependent oxidoreductase | E5284_RS17970 | Not Available | Negative | 3740222 - 3740716 | 18426.5 |
| cold-shock protein | E5284_RS17975 | Not Available | Negative | 3740975 - 3741451 | 17691.4 |
| ymja family protein | E5284_RS17980 | Not Available | Negative | 3741525 - 3741770 | 9307.67 |
| hypothetical protein | E5284_RS17985 | Not Available | Negative | 3742225 - 3742776 | 20449.3 |
| mbl fold metallo-hydrolase | E5284_RS17990 | Not Available | Positive | 3742999 - 3743775 | 28342.9 |
| glxa family transcriptional regulator | E5284_RS17995 | Not Available | Positive | 3743794 - 3744747 | 35303.2 |
| class i sam-dependent dna methyltransferase | E5284_RS18000 | Not Available | Negative | 3744754 - 3745362 | 22398.5 |
| laci family dna-binding transcriptional regulator | E5284_RS18005 | Not Available | Positive | 3745537 - 3746607 | 38074.6 |
| beta-galactosidase | E5284_RS18010 | Not Available | Positive | 3746762 - 3749839 | 116366.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

