Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homocysteine s-methyltransferase | E5284_RS17915 | Not Available | Negative | 3727018 - 3727950 | 33846.1 |
| s-methylmethionine permease | E5284_RS17920 | Not Available | Negative | 3727937 - 3729340 | 50544.8 |
| 3-(3-hydroxy-phenyl)propionate transporter mhpt | E5284_RS17925 | Not Available | Negative | 3729618 - 3730832 | 41545.4 |
| 4-hydroxy-2-oxovalerate aldolase | E5284_RS17930 | Not Available | Negative | 3730901 - 3731914 | 36477.6 |
| acetaldehyde dehydrogenase | E5284_RS17935 | Not Available | Negative | 3731911 - 3732861 | 33230.4 |
| 2-keto-4-pentenoate hydratase | E5284_RS17940 | Not Available | Negative | 3732858 - 3733667 | 28855.4 |
| 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase | E5284_RS17945 | Not Available | Negative | 3733677 - 3734543 | 31946.3 |
| 2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase | E5284_RS17950 | Not Available | Negative | 3734572 - 3735516 | 33971.6 |
| bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | E5284_RS17955 | Not Available | Negative | 3735518 - 3737182 | 61619.6 |
| dna-binding transcriptional regulator | E5284_RS17960 | Not Available | Positive | 3737374 - 3738186 | 30400.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

