Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taurine dioxygenase | E5284_RS17860 | Not Available | Negative | 3715338 - 3716189 | 32432.3 |
| taurine abc transporter permease tauc | E5284_RS17865 | Not Available | Negative | 3716186 - 3717013 | 29581.6 |
| taurine abc transporter atp-binding subunit | E5284_RS17870 | Not Available | Negative | 3717010 - 3717777 | 28053.3 |
| taurine abc transporter substrate-binding protein | E5284_RS17875 | Not Available | Negative | 3717788 - 3718750 | 34339.9 |
| response regulator transcription factor | E5284_RS17885 | Not Available | Positive | 3719095 - 3719724 | 22864.7 |
| mase1 domain-containing protein | E5284_RS17890 | Not Available | Positive | 3719724 - 3721265 | 58209.5 |
| mfs transporter family glucose-6-phosphate receptor uhpc | E5284_RS17895 | Not Available | Positive | 3721351 - 3722655 | 47827.3 |
| abc transporter substrate-binding protein | E5284_RS17900 | Not Available | Positive | 3722652 - 3723683 | 37467.6 |
| abc transporter permease | E5284_RS17905 | Not Available | Positive | 3723820 - 3725898 | 75883.2 |
| ferric abc transporter atp-binding protein | E5284_RS17910 | Not Available | Positive | 3725910 - 3726956 | 39085.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

