Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux mfs transporter | E5284_RS17810 | Not Available | Negative | 3702871 - 3704067 | 43008.1 |
| d-alanine--d-alanine ligase | E5284_RS17815 | Not Available | Positive | 3704369 - 3705463 | 39224.9 |
| duf2754 domain-containing protein | E5284_RS17820 | Not Available | Negative | 3705487 - 3705705 | 8284.09 |
| duf2755 family protein | E5284_RS17825 | Not Available | Positive | 3705971 - 3706294 | 11886.7 |
| duf1615 domain-containing protein | E5284_RS17830 | Not Available | Negative | 3706279 - 3707382 | 40715.8 |
| peptide antibiotic transporter sbma | E5284_RS17835 | Not Available | Negative | 3707397 - 3708617 | 46345.7 |
| d-alanyl-d-alanine- carboxypeptidase/endopeptidase amph | E5284_RS17840 | Not Available | Positive | 3709001 - 3710158 | 41624.2 |
| hydrogen peroxide resistance inhibitor ipra | E5284_RS17845 | Not Available | Negative | 3710160 - 3710783 | 24054.4 |
| autotransporter adhesin ehab | E5284_RS17850 | Not Available | Negative | 3710866 - 3713790 | 103841.0 |
| porphobilinogen synthase | E5284_RS17855 | Not Available | Positive | 3714282 - 3715256 | 35569.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

