Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator nrdr | E5284_RS17660 | Not Available | Negative | 3671033 - 3671482 | 17198.9 |
| duf3251 domain-containing protein | E5284_RS17665 | Not Available | Positive | 3671637 - 3672176 | 19675.7 |
| nucleoside-specific channel-forming protein tsx | E5284_RS17670 | Not Available | Positive | 3672475 - 3673353 | 33557.8 |
| protein translocase subunit secf | E5284_RS17675 | Not Available | Negative | 3673528 - 3674499 | 35341.6 |
| protein translocase subunit secd | E5284_RS17680 | Not Available | Negative | 3674510 - 3676357 | 66556.0 |
| preprotein translocase subunit yajc | E5284_RS17685 | Not Available | Negative | 3676385 - 3676717 | 11848.8 |
| trna guanosine(34) transglycosylase tgt | E5284_RS17690 | Not Available | Negative | 3676740 - 3677867 | 42540.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | E5284_RS17695 | Not Available | Negative | 3677921 - 3678991 | 39331.9 |
| acp phosphodiesterase | E5284_RS17700 | Not Available | Positive | 3679085 - 3679666 | 22957.3 |
| peroxiredoxin | E5284_RS17705 | Not Available | Positive | 3679834 - 3680436 | 22250.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

