Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uracil 4-sulfurtransferase thii | E5284_RS17610 | Not Available | Negative | 3661619 - 3663067 | 54817.1 |
| exodeoxyribonuclease vii small subunit | E5284_RS17615 | Not Available | Positive | 3663262 - 3663504 | 8938.44 |
| (2e,6e)-farnesyl diphosphate synthase | E5284_RS17620 | Not Available | Positive | 3663505 - 3664404 | 31987.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | E5284_RS17625 | Not Available | Positive | 3664429 - 3666291 | 67519.8 |
| aldo/keto reductase | E5284_RS17630 | Not Available | Positive | 3666347 - 3667321 | 36278.0 |
| phosphatidylglycerophosphatase a | E5284_RS17635 | Not Available | Negative | 3667380 - 3667898 | 19479.4 |
| thiamine-phosphate kinase | E5284_RS17640 | Not Available | Negative | 3667876 - 3668853 | 35061.6 |
| transcription antitermination factor nusb | E5284_RS17645 | Not Available | Negative | 3668930 - 3669349 | 15677.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | E5284_RS17650 | Not Available | Negative | 3669369 - 3669839 | 16143.4 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | E5284_RS17655 | Not Available | Negative | 3669926 - 3671029 | 40214.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

